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LINC00839 and PTBP1
Data Source:
BioGRID
(unspecified method)
LINC00839
PTBP1
Description
long intergenic non-protein coding RNA 839
polypyrimidine tract binding protein 1
Image
No pdb structure
GO Annotations
Cellular Component
Nucleus
Nucleoplasm
Nucleolus
Membrane
Extracellular Exosome
Molecular Function
RNA Binding
MRNA Binding
Protein Binding
Poly-pyrimidine Tract Binding
Pre-mRNA Binding
Biological Process
Regulation Of Alternative MRNA Splicing, Via Spliceosome
MRNA Splicing, Via Spliceosome
MRNA Processing
RNA Splicing
Fibroblast Growth Factor Receptor Signaling Pathway
RNA Metabolic Process
Negative Regulation Of RNA Splicing
Positive Regulation Of Protein Dephosphorylation
Regulation Of RNA Splicing
Regulation Of Cell Differentiation
Negative Regulation Of MRNA Splicing, Via Spliceosome
Negative Regulation Of Muscle Cell Differentiation
Positive Regulation Of Calcineurin-NFAT Signaling Cascade
IRES-dependent Viral Translational Initiation
Pathways
FGFR2 alternative splicing
mRNA Splicing - Major Pathway
Processing of Capped Intron-Containing Pre-mRNA
Drugs
Diseases
GWAS
Hematocrit (
32888494
27863252
)
Hemoglobin (
32888494
)
Hemoglobin concentration (
27863252
)
Lymphocyte percentage of white cells (
32888494
)
Red blood cell count (
32888494
)
Refractive error (
32231278
)
Vertical cup-disc ratio (multi-trait analysis) (
31959993
)
Interacting Genes
82 interacting genes:
ADAMTS15
AKAP13
ALDH16A1
APOL3
BFSP1
CALM1
CC2D1B
CCDC168
CCDC93
CDC16
CEP192
CEP295NL
CHPF
CIZ1
CLGN
CLPTM1
COPB1
DNAH10
DPEP3
EFL1
EID2
EMX1
FAAP100
FAM13B
FBXL5
HAPLN4
IQCN
IRX4
JAKMIP2
KLK14
KRT1
KRT6B
L1CAM
MEX3A
MEX3B
MEX3C
MEX3D
MICAL2
MYO7A
NDUFA2
NOC4L
NOTCH3
NVL
OS9
P4HB
PABPN1
PALM3
PARP6
PHACTR1
PKD1L2
PLOD3
PNPLA3
POMT2
PRSS1
PRSS3
PTBP1
PTEN
PTPRA
QSOX2
RAPGEF6
RIF1
RPLP2
RPTOR
RYR2
SEMA4D
SEPTIN12
SEPTIN9
SERHL2
SLC7A14
SOWAHB
SREBF2
SYNE1
SYNE3
TAS1R3
TCF24
TMC4
TRO
UBE2S
VANGL1
YAP1
YIPF1
ZFPL1
102 interacting genes:
APBB1
APP
CALCOCO2
CASP3
FUS
H3-4
HIF1A
HMGA1
HMGA2
HNRNPAB
HNRNPL
IL7R
LINC00839
LINC01554
MARK4
MIR1-1
MIR1-2
MIR106A
MIR106B
MIR107
MIR10B
MIR122
MIR128-1
MIR128-2
MIR138-1
MIR138-2
MIR140
MIR141
MIR143
MIR145
MIR155
MIR15A
MIR15B
MIR16-1
MIR16-2
MIR17
MIR18A
MIR18B
MIR199A1
MIR199A2
MIR19A
MIR19B1
MIR19B2
MIR200A
MIR200B
MIR200C
MIR205
MIR206
MIR20A
MIR20B
MIR21
MIR214
MIR221
MIR222
MIR25
MIR29A
MIR29B1
MIR29B2
MIR29C
MIR31
MIR34A
MIR34B
MIR34C
MIR363
MIR429
MIR451A
MIR7-1
MIR7-2
MIR7-3
MIR9-1
MIR9-2
MIR9-3
MIR92A1
MIR92A2
MIR93
MIR98
MIRLET7A1
MIRLET7A2
MIRLET7A3
MIRLET7B
MIRLET7C
MIRLET7D
MIRLET7E
MIRLET7F1
MIRLET7F2
MIRLET7G
MIRLET7I
NONO
PCBP1
PCBP2
PCBP3
PRKACA
QKI
RAVER1
RAVER2
RBFOX2
RBM10
SFPQ
SNRPA
SRPK2
SUMO2
ZMYM2
Entrez ID
84856
5725
HPRD ID
17516
02823
Ensembl ID
ENSG00000185904
ENSG00000011304
Uniprot IDs
P26599
PDB IDs
1QM9
1SJQ
1SJR
2AD9
2ADB
2ADC
2EVZ
2N3O
3ZZY
3ZZZ
Enriched GO Terms of Interacting Partners
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Tagcloud (Difference)
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Tagcloud (Intersection)
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